Using Human Phenotype Ontology for Phenotypic Analysis of Clinical Notes
Shen, F.; Wang, L.; Liu, H.
Studies in Health Technology and Informatics 245: 1285
2017
ISSN/ISBN: 0926-9630 PMID: 29295370 Document Number: 694642
Phenotypes are defined as observable characteristics of organisms. To facilitate the translation between genotype and phenotype, Human Phenotype Ontology (HPO) was developed as a semantically computable standardized vocabulary to capture phenotypic abnormalities found in human. In this study, we investigated the use of HPO to annotate phenotypic information in clinical domain by leveraging a corpus of 12.8 million clinical notes created from 2010 to 2015 for 729 thousand patients at Mayo Clinic Rochester campus.
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