Molecular epidemiologic analysis on new emerged type 3 dengue virus in Guangzhou in 2009
Di, B.; Bai, Z.-j.; Wang, Y.-l.; Luo, L.; Chen, Y.; Jiang, L.-y.; Yang, Z.-c.; Wang, M.
Zhonghua Liu Xing Bing Xue Za Zhi 31(7): 804-807
2010
ISSN/ISBN: 0254-6450 PMID: 21162848 Document Number: 646624
To analyze and trace the infection source the envelope (E) gene of the new emerged type 3 dengue virus in Guangzhou in 2009. Sera were collected from patients infected with local dengue fever. Dengue virus was cultured and isolated by C6/36 cells. The whole length E gene was amplified from the positive specimen by RT-PCR, thereby sequenced and phylogenetic tree drawn by neighbor-joining method. Both data on epidemiologic and molecular studies were processed and analysed. 7 strains of type 3 dengue virus were isolated from samples of the 19 patients. E gene of these strains was amplified. The complete E genes of 7 strains belonged to 1479 nucleotides in length, encoding a polyprotein of 493 amino acids. Data from the phylogenetic analysis showed that 09/GZ/1081, 09/GZ/1483 and 09/GZ/10806 strains fell within the Southeast Asia/South Pacific group. 09/GZ/10616, 09/GZ/11144, 09/GZ/11194 while 09/GZ/13105 strains fell within the India group. The type 3 dengue virus identified in Guangzhou area in 2009 was imported and could be decided into two genotypes.